Java example source code file (geometricTestCases)

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The geometricTestCases Java example source code

# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements.  See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License.  You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
#------------------------------------------------------------------------------
# R source file to validate Geometric distribution tests in
# org.apache.commons.math.distribution.GeometricDistributionTest
#
# To run the test, install R, put this file and testFunctions
# into the same directory, launch R from this directory and then enter
# source("<name-of-this-file>")
#
# R functions used
# dgeom(x, prob, log = FALSE) <- density
# pgeom(q, prob, lower.tail = TRUE, log.p = FALSE) <- distribution
# qgeom(p, prob, lower.tail = TRUE, log.p = FALSE) <- quantiles
#------------------------------------------------------------------------------
tol <- 1E-6                       # error tolerance for tests
#------------------------------------------------------------------------------
# Function definitions

source("testFunctions")           # utility test functions

# function to verify density computations

verifyDensity <- function(points, expected, prob, tol, log = FALSE) {
    rDensityValues <- rep(0, length(points))
    i <- 0
    for (point in points) {
        i <- i + 1
        rDensityValues[i] <- dgeom(point, prob, log)
    }
    output <- c("Density test prob = ", prob)
    if (assertEquals(expected,rDensityValues,tol,"Density Values")) {
        displayPadded(output, SUCCEEDED, WIDTH)
    } else {
        displayPadded(output, FAILED, WIDTH)
    }
}

# function to verify distribution computations

verifyDistribution <- function(points, expected, prob, tol) {
    rDistValues <- rep(0, length(points))
    i <- 0
    for (point in points) {
        i <- i + 1
        rDistValues[i] <- pgeom(point, prob)
    }
    output <- c("Distribution test prob = ", prob)
    if (assertEquals(expected,rDistValues,tol,"Distribution Values")) {
        displayPadded(output, SUCCEEDED, WIDTH)
    } else {
        displayPadded(output, FAILED, WIDTH)
    }
}

#--------------------------------------------------------------------------
cat("Geometric test cases\n")

prob <- 0.4

densityPoints <- c(-1,  0,  1,  2,  3,  4,  5,  6,  7,  8,
                    9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
                   19, 20, 21, 22, 23, 24, 25, 26, 27, 28)
densityValues <- c(0, 0.4, 0.24, 0.144, 0.0864, 0.05184, 0.031104, 0.0186624, 0.01119744, 0.006718464,
                   0.0040310784, 0.00241864704, 0.001451188224, 0.0008707129344, 0.00052242776064,
                   0.000313456656384, 0.0001880739938304, 0.00011284439629824, 6.7706637778944e-05,
                   4.06239826673664e-05, 2.43743896004198e-05, 1.46246337602519e-05, 8.77478025615113e-06,
                   5.26486815369068e-06, 3.15892089221441e-06, 1.89535253532865e-06, 1.13721152119719e-06,
                   6.82326912718312e-07, 4.09396147630988e-07, 2.45637688578593e-07)
logDensityValues <- c(-Inf, -0.916290731874155, -1.42711635564015, -1.93794197940614, -2.44876760317213,
                      -2.95959322693812, -3.47041885070411, -3.9812444744701, -4.49207009823609,
                      -5.00289572200208, -5.51372134576807, -6.02454696953406, -6.53537259330005,
                      -7.04619821706604, -7.55702384083203, -8.06784946459802, -8.57867508836402,
                      -9.08950071213001, -9.600326335896, -10.111151959662, -10.621977583428,
                      -11.132803207194, -11.64362883096, -12.154454454726, -12.6652800784919, -13.1761057022579,
                      -13.6869313260239, -14.1977569497899, -14.7085825735559, -15.2194081973219)
distributionValues <- c(0, 0.4, 0.64, 0.784, 0.8704, 0.92224, 0.953344, 0.9720064, 0.98320384, 0.989922304,
                        0.9939533824, 0.99637202944, 0.997823217664, 0.9986939305984, 0.99921635835904,
                        0.999529815015424, 0.999717889009254, 0.999830733405553, 0.999898440043332,
                        0.999939064025999, 0.999963438415599, 0.99997806304936, 0.999986837829616,
                        0.99999210269777, 0.999995261618662, 0.999997156971197, 0.999998294182718,
                        0.999998976509631, 0.999999385905779, 0.999999631543467)
#Eliminate p=1 case because it will mess up adjustement below
inverseCumPoints <- c(0, 0.001, 0.010, 0.025, 0.050, 0.100, 0.999,
                      0.990, 0.975, 0.950, 0.900)
inverseCumValues <- c(-1, -1, -1, -1, -1, -1, 12, 8, 6, 4, 3)

verifyDensity(densityPoints, densityValues, prob, tol)
verifyDensity(densityPoints, logDensityValues, prob, tol, TRUE)
verifyDistribution(densityPoints, distributionValues, prob, tol)

i <- 0
rInverseCumValues <- rep(0,length(inverseCumPoints))
for (point in inverseCumPoints) {
  i <- i + 1
  rInverseCumValues[i] <- qgeom(point, prob)
}

output <- c("Inverse Distribution test prob = ", prob)
# R defines quantiles from the right, need to subtract one
if (assertEquals(inverseCumValues, rInverseCumValues-1, tol,
    "Inverse Dist Values")) {
    displayPadded(output, SUCCEEDED, 80)
} else {
    displayPadded(output, FAILED, 80)
}

displayDashes(WIDTH)